MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-87-P1

Family name MIR-87 (all species)
Seed UGAGCAA
Species Deer tick (Ixodes scapularis)
MiRBase ID
Paralogues Isc-Mir-87-P2 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Csc-Mir-87-P1k1  Csc-Mir-87-P1k2  Csc-Mir-87-P1l  Cte-Mir-87-P1  Dgr-Mir-87-P1  Dlo-Mir-87-P1  Gsp-Mir-87  Hru-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Lpo-Mir-87-P1c  Lpo-Mir-87-P1d  Lpo-Mir-87-P1e  Lpo-Mir-87-P1f  Lpo-Mir-87-P1g  Lpo-Mir-87-P1h  Lpo-Mir-87-P1i  Lpo-Mir-87-P1j  Mgi-Mir-87-P1  Ofu-Mir-87-P1  Pau-Mir-87-P1  Pve-Mir-87-P1  Sne-Mir-87  Snu-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609880.1: 72740477-72740537 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAACCGUCUCCGUCUGGGUGACUCUGAUGUGCCCGGAACUUUGUCUCAGCCUGGACUGUUAGCGCAGGUGAGCAAAGUUUCAGGUGUGUUGCAGUCACUCCAACUCACCAGUGGAUCGU
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Structure
        10          20        30        40        50        60 
UUCAACCGUCUCCGUCU-  -|     C     UG  C         U    G   GGACUG 
                  GG GUGACU UGAUG  CC GGAACUUUG CUCA CCU      \
                  CC CACUGA GUUGU  GG CUUUGAAAC GAGU GGA      U
UGCUAGGUGACCACUCAA  U^     C     GU  A         -    -   CGCGAU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr To
Star sequence

Isc-Mir-87-P1_5p*
mirBase accessionNone
Sequence 
0- GUGCCCGGAACUUUGUCUCAGCCU -24
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Mature sequence

Isc-Mir-87-P1_3p
mirBase accessionNone
Sequence 
39- GUGAGCAAAGUUUCAGGUGUGU -61
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