MirGeneDB ID | Isc-Mir-87-P1 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
|
Paralogues |
Isc-Mir-87-P2
|
Orthologues |
Bge-Mir-87-P1
Cbr-Mir-87-o1
Cel-Mir-87-o1
Csc-Mir-87-P1k1
Csc-Mir-87-P1k2
Csc-Mir-87-P1l
Cte-Mir-87-P1
Dgr-Mir-87-P1
Dlo-Mir-87-P1
Gsp-Mir-87
Hru-Mir-87-P1
Lan-Mir-87-P1
Lgi-Mir-87-P1
Lpo-Mir-87-P1c
Lpo-Mir-87-P1d
Lpo-Mir-87-P1e
Lpo-Mir-87-P1f
Lpo-Mir-87-P1g
Lpo-Mir-87-P1h
Lpo-Mir-87-P1i
Lpo-Mir-87-P1j
Mgi-Mir-87-P1
Ofu-Mir-87-P1
Pau-Mir-87-P1
Pve-Mir-87-P1
Sne-Mir-87
Snu-Mir-87-P1
Tca-Mir-87-P1
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_016920785.2_ASM1692078v2_ISC) |
NW_024609880.1: 72740477-72740537 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCAACCGUCUCCGUCUGGGUGACUCUGAUGUGCCCGGAACUUUGUCUCAGCCUGGACUGUUAGCGCAGGUGAGCAAAGUUUCAGGUGUGUUGCAGUCACUCCAACUCACCAGUGGAUCGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCAACCGUCUCCGUCU- -| C UG C U G GGACUG
GG GUGACU UGAUG CC GGAACUUUG CUCA CCU \
CC CACUGA GUUGU GG CUUUGAAAC GAGU GGA U
UGCUAGGUGACCACUCAA U^ C GU A - - CGCGAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Sa |
Sa |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Isc-Mir-87-P1_5p* |
mirBase accession | None |
Sequence |
0- GUGCCCGGAACUUUGUCUCAGCCU -24
Get sequence
|
Mature sequence |
Isc-Mir-87-P1_3p |
mirBase accession | None |
Sequence |
39- GUGAGCAAAGUUUCAGGUGUGU -61
Get sequence
|