MirGeneDB ID | Isc-Mir-87-P2 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-87
|
Paralogues |
Isc-Mir-87-P1
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Orthologues |
Aae-Mir-87-P2
Aga-Mir-87-P2
Bge-Mir-87-P2a
Bge-Mir-87-P2b
Cbr-Mir-87-o2
Cel-Mir-87-o2
Csc-Mir-87-P2k
Csc-Mir-87-P2l
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dgr-Mir-87-P2
Dlo-Mir-87-P2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Gpa-Mir-87-P2-v1
Gpa-Mir-87-P2-v2
Gsp-Mir-87
Hme-Mir-87-P2
Hru-Mir-87-P2
Lan-Mir-87-P2
Lpo-Mir-87-P2c
Lpo-Mir-87-P2d
Lpo-Mir-87-P2e
Lpo-Mir-87-P2f
Lpo-Mir-87-P2g
Lpo-Mir-87-P2h
Lpo-Mir-87-P2i
Lpo-Mir-87-P2j
Mgi-Mir-87-P2
Ofu-Mir-87-P2
Pau-Mir-87-P2
Pve-Mir-87-P2
Sne-Mir-87
Snu-Mir-87-P2
Tca-Mir-87-P2
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Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (GCF_016920785.2_ASM1692078v2_ISC) |
NW_024609880.1: 72740057-72740115 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CGGUGGGCACACAUCUCGCUUCUUGACUGCCUGCCUGAAAAUUUGUCUCAAACCUUUCAUAGUGUAGGUGAGCAAAGUUUCAGGUGUGUUGUCUUGGAGGACACACUGCAUCUCUGCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGUGGGCACACAUCUCG--| UU U C A U AA UUCA
CUUC GAC GC UGCCUGAAA UUUG CUC ACCU U
GAGG CUG UG GUGGACUUU AAAC GAG UGGA A
AACGUCUCUACGUCACACAG^ UU U U G - -- UGUG
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Em |
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Em |
Em |
Em |
Em |
Em |
Sa |
Sa |
To |
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Star sequence |
Isc-Mir-87-P2_5p* |
mirBase accession | None |
Sequence |
0- CUGCCUGAAAAUUUGUCUCAAACCU -25
Get sequence
|
Mature sequence |
Isc-Mir-87-P2_3p |
mirBase accession | MIMAT0012707 |
Sequence |
37- GUGAGCAAAGUUUCAGGUGUGU -59
Get sequence
|