MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-87-o2

Family name MIR-87 (all species)
Seed UGAGCAA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-233
Paralogues Cel-Mir-87-o1 
Orthologues Aae-Mir-87-P2  Aga-Mir-87-P2  Bge-Mir-87-P2a  Bge-Mir-87-P2b  Cbr-Mir-87-o2  Csc-Mir-87-P2k  Csc-Mir-87-P2l  Cte-Mir-87-P2  Dan-Mir-87-P2-v1  Dan-Mir-87-P2-v2  Dgr-Mir-87-P2  Dlo-Mir-87-P2  Dme-Mir-87-P2-v1  Dme-Mir-87-P2-v2  Dmo-Mir-87-P2-v1  Dmo-Mir-87-P2-v2  Dsi-Mir-87-P2-v1  Dsi-Mir-87-P2-v2  Dya-Mir-87-P2-v1  Dya-Mir-87-P2-v2  Gpa-Mir-87-P2-v1  Gpa-Mir-87-P2-v2  Gsp-Mir-87  Hme-Mir-87-P2  Hru-Mir-87-P2  Isc-Mir-87-P2  Lan-Mir-87-P2  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j  Mgi-Mir-87-P2  Ofu-Mir-87-P2  Pau-Mir-87-P2  Pve-Mir-87-P2  Sne-Mir-87  Snu-Mir-87-P2  Tca-Mir-87-P2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrX: 12078602-12078666 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAUGCCCCUUAUAUAGCAUCUUUCUGUCUCGCCCAUCCCGUUGCUCCAAUAUUCUAACAACAAGUGAUUAUUGAGCAAUGCGCAUGUGCGGGAUAGACUGAUGGCUGCUUUUUGUCCGGAGCA
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Structure
        10          20        30        40         50        60  
GAAAUGCCCCUUAUAUAG--    UU          C   CC-|       C    UUCUAACA 
                    CAUC  UCUGUCUCGC CAU   CGUUGCUC AAUA        \
                    GUAG  AGAUAGGGCG GUA   GUAACGAG UUAU        A
ACGAGGCCUGUUUUUCGUCG    UC          U   CGC^       -    UAGUGAAC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-87-o2_5p*
mirBase accessionMIMAT0020329
Sequence 
0- UCGCCCAUCCCGUUGCUCCAAUA -23
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Mature sequence

Cel-Mir-87-o2_3p
mirBase accessionMIMAT0000288
Sequence 
42- UUGAGCAAUGCGCAUGUGCGGGA -65
Get sequence
Proposed targets microrna.org: MIMAT0000288
TargetScanWorm: cel-miR-233