MirGeneDB ID | Aae-Mir-87-P2 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-87
|
Paralogues |
|
Orthologues |
Aga-Mir-87-P2
Bge-Mir-87-P2a
Bge-Mir-87-P2b
Cbr-Mir-87-o2
Cel-Mir-87-o2
Csc-Mir-87-P2k
Csc-Mir-87-P2l
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dgr-Mir-87-P2
Dlo-Mir-87-P2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Gpa-Mir-87-P2-v1
Gpa-Mir-87-P2-v2
Gsp-Mir-87
Hme-Mir-87-P2
Hru-Mir-87-P2
Isc-Mir-87-P2
Lan-Mir-87-P2
Lpo-Mir-87-P2c
Lpo-Mir-87-P2d
Lpo-Mir-87-P2e
Lpo-Mir-87-P2f
Lpo-Mir-87-P2g
Lpo-Mir-87-P2h
Lpo-Mir-87-P2i
Lpo-Mir-87-P2j
Mgi-Mir-87-P2
Ofu-Mir-87-P2
Pau-Mir-87-P2
Pve-Mir-87-P2
Sne-Mir-87
Snu-Mir-87-P2
Tca-Mir-87-P2
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Aaeg_L3) |
supercont1.360: 1010798-1010867 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGCAACGGAAAACCAGAUUGUCACUGGCCAGCCUGAAAUUUGCUAAACCUGUGUGUAUUUGAUUCAAACAAUCAAGGUGAGCAAAUUUUCAGGUGUGUCGGAGAACAAUCGCAAUCAUCGUGGGUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUGCAACGGAAAACCA- - A CA -| AA GUGUGUAUUUG
GAUUG UC CUGGC GCCUG AAAUUUGCU ACCU A
CUAAC AG GGCUG UGGAC UUUAAACGA UGGA U
GUGUGGGUGCUACUAACG A A UG U^ G- ACUAACAAACU
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Aae-Mir-87-P2_5p* |
mirBase accession | None |
Sequence |
0- CAGCCUGAAAUUUGCUAAACCU -22
Get sequence
|
Mature sequence |
Aae-Mir-87-P2_3p |
mirBase accession | MIMAT0014252 |
Sequence |
48- GUGAGCAAAUUUUCAGGUGUGU -70
Get sequence
|