MirGeneDB ID | Gpa-Mir-87-P2-v1 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-87-P2-v2
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Orthologues |
Aae-Mir-87-P2
Aga-Mir-87-P2
Bge-Mir-87-P2a
Bge-Mir-87-P2b
Cbr-Mir-87-o2
Cel-Mir-87-o2
Csc-Mir-87-P2k
Csc-Mir-87-P2l
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dgr-Mir-87-P2
Dlo-Mir-87-P2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Gsp-Mir-87
Hme-Mir-87-P2
Hru-Mir-87-P2
Isc-Mir-87-P2
Lan-Mir-87-P2
Lpo-Mir-87-P2c
Lpo-Mir-87-P2d
Lpo-Mir-87-P2e
Lpo-Mir-87-P2f
Lpo-Mir-87-P2g
Lpo-Mir-87-P2h
Lpo-Mir-87-P2i
Lpo-Mir-87-P2j
Mgi-Mir-87-P2
Ofu-Mir-87-P2
Pau-Mir-87-P2
Pve-Mir-87-P2
Sne-Mir-87
Snu-Mir-87-P2
Tca-Mir-87-P2
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (GpalI1) |
Scaffold60: 202315-202381 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUCCUAAUUUUAAGCCGAUUUAUUUCAUUCGCACCUGUAUCUUGCUCAACCGUUACUUAUAUAAAAUCCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUCAUCUAAGAAUCAACGGCCAAAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUUUCCUAAUUUUAAGCC-- UU AUU U-| C GUUACUUA
GAU AUUUC CGCACCUG AU UUGCUCAACC U
CUA UAAAG GUGUGGAC UA AACGAGUUGG A
UGAAACCGGCAACUAAGAAU CU AGU UU^ A CCUAAAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Gpa-Mir-87-P2-v1_5p* |
mirBase accession | None |
Sequence |
0- UCGCACCUGUAUCUUGCUCAACC -23
Get sequence
|
Mature sequence |
Gpa-Mir-87-P2-v1_3p |
mirBase accession | None |
Sequence |
43- UUGAGCAAAAUUUCAGGUGUGUGA -67
Get sequence
|