MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-87-P2

Family name MIR-87 (all species)
Seed UGAGCAA
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-87-P1 
Orthologues Aae-Mir-87-P2  Aga-Mir-87-P2  Bge-Mir-87-P2a  Bge-Mir-87-P2b  Cbr-Mir-87-o2  Cel-Mir-87-o2  Csc-Mir-87-P2k  Csc-Mir-87-P2l  Cte-Mir-87-P2  Dan-Mir-87-P2-v1  Dan-Mir-87-P2-v2  Dgr-Mir-87-P2  Dlo-Mir-87-P2  Dme-Mir-87-P2-v1  Dme-Mir-87-P2-v2  Dmo-Mir-87-P2-v1  Dmo-Mir-87-P2-v2  Dsi-Mir-87-P2-v1  Dsi-Mir-87-P2-v2  Dya-Mir-87-P2-v1  Dya-Mir-87-P2-v2  Gpa-Mir-87-P2-v1  Gpa-Mir-87-P2-v2  Gsp-Mir-87  Hme-Mir-87-P2  Isc-Mir-87-P2  Lan-Mir-87-P2  Lpo-Mir-87-P2c  Lpo-Mir-87-P2d  Lpo-Mir-87-P2e  Lpo-Mir-87-P2f  Lpo-Mir-87-P2g  Lpo-Mir-87-P2h  Lpo-Mir-87-P2i  Lpo-Mir-87-P2j  Mgi-Mir-87-P2  Ofu-Mir-87-P2  Pau-Mir-87-P2  Pve-Mir-87-P2  Sne-Mir-87  Snu-Mir-87-P2  Tca-Mir-87-P2 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000010.1: 16273794-16273851 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUAACCUCCCCUGAUGUGUUUGUUGGAUGUGCCUGAAAUUUUGACUCAAACCUGAUAUUUCAAGGUGAGCAAAGUUUCAGGUGUAUCUGAUGAGUGACUUGUCUUCAGGGAAAGAU
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Structure
        10        20          30        40        50          
GAGUAACCUCCCCUGAUGUG--| UG UG    UG            A   AA    GAUA 
                      UU  U  GAUG  CCUGAAAUUUUG CUC  ACCU    \
                      GA  A  CUAU  GGACUUUGAAAC GAG  UGGA    U
UAGAAAGGGACUUCUGUUCAGU^ GU GU    GU            -   --    ACUU 
      110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Hru-Mir-87-P2_5p*
mirBase accessionNone
Sequence 
0- GUGCCUGAAAUUUUGACUCAAACCU -25
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Mature sequence

Hru-Mir-87-P2_3p
mirBase accessionNone
Sequence 
36- GUGAGCAAAGUUUCAGGUGUAU -58
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