Mir-87-P2d

MirGeneDB ID

Lpo-Mir-87-P2d

Family name

MIR-87 (all species)

Seed

UGAGCAA

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-87-P1c Lpo-Mir-87-P1d Lpo-Mir-87-P1e Lpo-Mir-87-P1f Lpo-Mir-87-P1g Lpo-Mir-87-P1h Lpo-Mir-87-P1i Lpo-Mir-87-P1j Lpo-Mir-87-P2c Lpo-Mir-87-P2e Lpo-Mir-87-P2f Lpo-Mir-87-P2g Lpo-Mir-87-P2h Lpo-Mir-87-P2i Lpo-Mir-87-P2j

Orthologues

Aae-Mir-87-P2 Aga-Mir-87-P2 Cbr-Mir-87-o2 Cel-Mir-87-o2 Cte-Mir-87-P2 Dan-Mir-87-P2-v1 Dan-Mir-87-P2-v2 Dgr-Mir-87-P2 Dlo-Mir-87-P2 Dme-Mir-87-P2-v1 Dme-Mir-87-P2-v2 Dmo-Mir-87-P2-v1 Dmo-Mir-87-P2-v2 Dsi-Mir-87-P2-v1 Dsi-Mir-87-P2-v2 Dya-Mir-87-P2-v1 Dya-Mir-87-P2-v2 Gpa-Mir-87-P2-v1 Gpa-Mir-87-P2-v2 Gsp-Mir-87 Hme-Mir-87-P2 Hru-Mir-87-P2 Isc-Mir-87-P2 Lan-Mir-87-P2 Mgi-Mir-87-P2 Ofu-Mir-87-P2 Pau-Mir-87-P2 Pve-Mir-87-P2 Sne-Mir-87 Snu-Mir-87-P2 Tca-Mir-87-P2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665817.1: 452773-452833 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UCAACAGAUAGUUCACAACCUGCCACAUGUACACCUGAAAGAUUGUCUCAACCUGUCAGUUACAACAAGGUGAGCAAAGUUUCAGGUGUGUAAGCUGCAGGACCCAAUCAGCCUGUACCGU

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Structure

        10          20        30        40        50        60 
UCAACAGAUAGUUCACAA--|    CACA             GA   U    A   GUCAGU 
                    CCUGC    UGUACACCUGAAA  UUG CUCA CCU      \
                    GGACG    AUGUGUGGACUUU  AAC GAGU GGA      U
UGCCAUGUCCGACUAACCCA^    UCGA             GA   -    -   ACAACA 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-87-P2d_5p*

mirBase accession

None

Sequence

0- ACACCUGAAAGAUUGUCUCAACCU -24

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Mature sequence

Lpo-Mir-87-P2d_3p

mirBase accession

None

Sequence

39- GUGAGCAAAGUUUCAGGUGUGU -61

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