MirGeneDB ID | Lpo-Mir-87-P2c |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-87-P1c
Lpo-Mir-87-P1d
Lpo-Mir-87-P1e
Lpo-Mir-87-P1f
Lpo-Mir-87-P1g
Lpo-Mir-87-P1h
Lpo-Mir-87-P1i
Lpo-Mir-87-P1j
Lpo-Mir-87-P2d
Lpo-Mir-87-P2e
Lpo-Mir-87-P2f
Lpo-Mir-87-P2g
Lpo-Mir-87-P2h
Lpo-Mir-87-P2i
Lpo-Mir-87-P2j
|
Orthologues |
Aae-Mir-87-P2
Aga-Mir-87-P2
Cbr-Mir-87-o2
Cel-Mir-87-o2
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dgr-Mir-87-P2
Dlo-Mir-87-P2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Gpa-Mir-87-P2-v1
Gpa-Mir-87-P2-v2
Gsp-Mir-87
Hme-Mir-87-P2
Hru-Mir-87-P2
Isc-Mir-87-P2
Lan-Mir-87-P2
Mgi-Mir-87-P2
Ofu-Mir-87-P2
Pau-Mir-87-P2
Pve-Mir-87-P2
Sne-Mir-87
Snu-Mir-87-P2
Tca-Mir-87-P2
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666175.1: 463869-463927 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAUUUUUACAACAUCGUGCUUUGCUGGCCCACCUGAAAGCUUGUCUCAACCUUUGACUUGAAGAGGUGAGCAAAGUUUCAGGUGUGUCAUAGAAGUAUGCAUUCACCUUACAAGAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAUUUUUACAACAUC--| GC C GC U A UUGAC
GUGCUUU UGGC CACCUGAAA UUG CUCA CCU \
UAUGAAG ACUG GUGGACUUU AAC GAGU GGA U
UGAGAACAUUCCACUUACG^ AU U GA - - GAAGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-87-P2c_5p* |
mirBase accession | None |
Sequence |
0- CCACCUGAAAGCUUGUCUCAACCU -24
Get sequence
|
Mature sequence |
Lpo-Mir-87-P2c_3p |
mirBase accession | None |
Sequence |
37- GUGAGCAAAGUUUCAGGUGUGU -59
Get sequence
|