MirGeneDB ID | Lpo-Mir-750-P4 |
Family name |
MIR-750 (all species) |
Seed |
CAGAUCU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-750-P5
Lpo-Mir-750-P6
|
Orthologues |
Aae-Mir-750
Aga-Mir-750
Agr-Mir-750
Asu-Mir-750
Bge-Mir-750
Bko-Mir-750
Bpl-Mir-750
Cte-Mir-750
Dgr-Mir-750
Dlo-Mir-750
Dma-Mir-750
Dpu-Mir-750
Eba-Mir-750
Esc-Mir-750
Hme-Mir-750
Hru-Mir-750
Isc-Mir-750
Lan-Mir-750
Lgi-Mir-750
Llo-Mir-750
Mgi-Mir-750
Mom-Mir-750
Npo-Mir-750
Obi-Mir-750
Ofu-Mir-750
Ovu-Mir-750
Pau-Mir-750
Pca-Mir-750
Pcr-Mir-750
Pdu-Mir-750
Pve-Mir-750
Rph-Mir-750
Sma-Mir-750
Sme-Mir-750
Snu-Mir-750
Tca-Mir-750
Tur-Mir-750
War-Mir-750
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013742361.1: 19623-19691 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAGUCUGAAGCAGCUUUUGUUCUUGUUUGAGUUGGAAGUAGGGGUCUUGACAUUAGAUGUUGAUUUCAAAAUGUGUCAGAUCUAACUCUUCCAGCUCAUUCACGUGCAAAAACCCAACGAAUCCUUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAGUCUGAAGCAGCUU-- UCU UU UAG-| U UUAGAUGUUG
UUGU UG UGAGUUGGAAG GGGUCU GACA \
AACG AC ACUCGACCUUC UCUAGA CUGU A
AGUUCCUAAGCAACCCAAA UGC UU UCAA^ - GUAAAACUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-750-P4_5p* |
mirBase accession | None |
Sequence |
0- AGUUGGAAGUAGGGGUCUUGACA -23
Get sequence
|
Mature sequence |
Lpo-Mir-750-P4_3p |
mirBase accession | None |
Sequence |
46- UCAGAUCUAACUCUUCCAGCUCA -69
Get sequence
|