MirGeneDB ID | Sma-Mir-750 |
Family name |
MIR-750 (all species) |
Seed |
CAGAUCU |
Species |
Blood fluke (Schistosoma mansoni) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-750
Aga-Mir-750
Agr-Mir-750
Asu-Mir-750
Ava-Mir-750-P9
Ava-Mir-750-P10
Bge-Mir-750
Bko-Mir-750
Bpl-Mir-750
Csc-Mir-750-P7
Csc-Mir-750-P8
Cte-Mir-750
Dgr-Mir-750
Dlo-Mir-750
Dma-Mir-750
Dpu-Mir-750
Eba-Mir-750
Efe-Mir-750-P1
Efe-Mir-750-P2
Efe-Mir-750-P3
Esc-Mir-750
Hme-Mir-750
Hru-Mir-750
Isc-Mir-750
Lan-Mir-750
Lgi-Mir-750
Llo-Mir-750
Lpo-Mir-750-P4
Lpo-Mir-750-P5
Lpo-Mir-750-P6
Mgi-Mir-750
Mom-Mir-750
Npo-Mir-750
Obi-Mir-750
Ofu-Mir-750
Ovu-Mir-750
Pau-Mir-750
Pca-Mir-750
Pcr-Mir-750
Pdu-Mir-750
Pve-Mir-750
Rph-Mir-750
Sme-Mir-750
Snu-Mir-750
Tca-Mir-750
Tur-Mir-750
War-Mir-750
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000237925.5_SM_V9_genomic) |
OU426848.1: 7214832-7215033 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUAUAAAUAUACAUAAACCAGGUAUGUAAAAGUUGGAAGGCCAGAUUUAGCGAAUAUUCACAACUGUAAUCUUCAAAUAACUUGUUCUCAACGAUAAAAUUGUCAUCAAUUAAUAGAAGUACAUGUACACUAAAUGAAAUUAUGACUGAGAAUUCAGUUAACAUUCAUAGAACAAGUUAGUUACUAGUGAGUAGAAGGAUUCUACCGCCAGAUCUGUCGCUUCCAACUCUACAAAUUCUGGCUUAACAGCUUUAACUAUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90 100 110 120
UAUAUAAAUAUACAUAAA-- UA-| AA GC- A AAUAUUCACAACUGUAAUCUUCAAAUAACUUGUUCUCAACGAUAAAAUUGUCAUCAAUUAAUAGAAGUACAUGUAC
CCAGG UGUA AGUUGGAAG CAGAUUU GCG \
GGUCU ACAU UCAACCUUC GUCUAGA CGC A
UGUAUCAAUUUCGACAAUUC UAA^ C- GCU C CAUCUUAGGAAGAUGAGUGAUCAUUGAUUGAACAAGAUACUUACAAUUGACUUAAGAGUCAGUAUUAAAGUAAAUC
260 250 240 230 220 210 200 190 180 170 160 150 140 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ad |
Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sma-Mir-750_5p* |
mirBase accession | None |
Sequence |
0- AAGUUGGAAGGCCAGAUUUAGCG -23
Get sequence
|
Mature sequence |
Sma-Mir-750_3p |
mirBase accession | None |
Sequence |
178- CCAGAUCUGUCGCUUCCAACUCUA -202
Get sequence
|