| MirGeneDB ID | Lpo-Mir-750-P5 |
|---|
| Family name |
MIR-750 (all species) |
|---|
| Seed |
CAGAUCU |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Mir-750-P6
Lpo-Mir-750-P7
|
|---|
| Orthologues |
Aae-Mir-750
Asu-Mir-750
Bge-Mir-750
Bpl-Mir-750
Cgi-Mir-750
Cte-Mir-750
Dma-Mir-750
Dpu-Mir-750
Esc-Mir-750
Hme-Mir-750
Isc-Mir-750
Lan-Mir-750
Lgi-Mir-750
Npo-Mir-750
Obi-Mir-750
Ovu-Mir-750
Sme-Mir-750
Tca-Mir-750
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013670786.1: 64923-64986 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCCAUUAUCACAGAGCUUUGUACCUGUUUGAGUUGGAAGUUGGAUCUCGACAUGUAAAUCUAAAUUUUGUGCCAGAUCUAACUCUUCCAGCUCGGAAAGGAACAACUGUAGCAUCAAUGACCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCAUUAUCACAGAGCU-- A G -- CG-| AUGUAAAU
UUGU CCU UUUGAGUUGGA AGUUGGAUCU AC \
AACA GGA AGGCUCGACCU UCAAUCUAGA UG C
GACCAGUAACUACGAUGUC A A UC CCG^ UUUUAAAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Lpo-Mir-750-P5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUUGGAAGUUGGAUCUCGAC -21
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-750-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
41- CCAGAUCUAACUCUUCCAGCUCG -64
Get sequence
|
|---|
