MirGeneDB ID | Mgi-Mir-750 |
Family name |
MIR-750 (all species) |
Seed |
CAGAUCU |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-750
Aga-Mir-750
Agr-Mir-750
Asu-Mir-750
Ava-Mir-750-P9
Ava-Mir-750-P10
Bge-Mir-750
Bko-Mir-750
Bpl-Mir-750
Csc-Mir-750-P7
Csc-Mir-750-P8
Cte-Mir-750
Dgr-Mir-750
Dlo-Mir-750
Dma-Mir-750
Dpu-Mir-750
Eba-Mir-750
Efe-Mir-750-P1
Efe-Mir-750-P2
Efe-Mir-750-P3
Esc-Mir-750
Hme-Mir-750
Hru-Mir-750
Isc-Mir-750
Lan-Mir-750
Lgi-Mir-750
Llo-Mir-750
Lpo-Mir-750-P4
Lpo-Mir-750-P5
Lpo-Mir-750-P6
Mom-Mir-750
Npo-Mir-750
Obi-Mir-750
Ofu-Mir-750
Ovu-Mir-750
Pau-Mir-750
Pca-Mir-750
Pcr-Mir-750
Pdu-Mir-750
Pve-Mir-750
Rph-Mir-750
Sma-Mir-750
Sme-Mir-750
Snu-Mir-750
Tca-Mir-750
Tur-Mir-750
War-Mir-750
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (CGI_GCA_000297895.1) |
scaffold514: 103030-103087 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCUGUUUCUGUUCAGAAGAUGCAUCAAUGAGUUGGAAGGUUUGGUCUCAGCAGUUCAGACCUUGCCAGAUCUAACUCUUCCAGCUCACUGCUGCAUUGUCAACUCUGCUUCCGCACG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCUGUUUCUGUUCAGAA-- U A -| U CA GUUC
GAUGCA CA UGAGUUGGAAG GUU GGUCU GCA A
UUACGU GU ACUCGACCUUC CAA CUAGA CGU G
GCACGCCUUCGUCUCAACUG C C U^ U C- UCCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Mgi-Mir-750_5p* |
mirBase accession | None |
Sequence |
0- AGUUGGAAGGUUUGGUCUCAGCA -23
Get sequence
|
Mature sequence |
Mgi-Mir-750_3p |
mirBase accession | None |
Sequence |
35- CCAGAUCUAACUCUUCCAGCUCA -58
Get sequence
|