MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-150
Paralogues
Orthologues Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(anoCar2)
6: 80358830-80358889 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGGAAUAUACAAAACUCUCUUUCCCUCUCUCCCAACCCUUGUACCAGUGCCAACUGUAGUCCUCACUGGUACAGAGGAUGGAAGGGUGGGCCUGCAGAGAUGAGACACACCUGGAAC
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Structure
        10         20         30        40        50         
GAAAGGAAUAUACAAAA-    CUUU-|  U    C   A  C           CCAACU 
                  CUCU     CCC CUCU CCA CC UUGUACCAGUG      G
                  GAGA     GGG GGGA GGU GG GACAUGGUCAC      U
CAAGGUCCACACAGAGUA    CGUCC^  U    A   A  A           UCCUGA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-150_5p

mirBase accessionMIMAT0021784
Sequence
0- UCUCCCAACCCUUGUACCAGUG -22
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Star sequence

Aca-Mir-150_3p*

mirBase accessionMIMAT0021785
Sequence
38- CUGGUACAGAGGAUGGAAGGGU -60
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