MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 41855487-41855542 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGCAGUGGCUCCUUUCCCCAUAGCCCUGUCUCCCAACCCUUGUACCAGUGCUGGGCUCAGACCCUGGUACAGGCCUGGGGGGCAGGGACCUGGGGACCCCGGCACCGGCAGACC
Get precursor sequence
Structure
        10          20        30        40        50        
GCAGCAGUGGCUCCUUU--|    UAG            AC   U       UGCUGGG 
                   CCCCA   CCCUGUCUCCCA  CCU GUACCAG       \
                   GGGGU   GGGACGGGGGGU  GGA CAUGGUC       C
CCAGACGGCCACGGCCCCA^    CCA            CC   -       CCAGACU 
    110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-150_5p
mirBase accessionNone
Sequence 
0- UCUCCCAACCCUUGUACCAGUG -22
Get sequence
Star sequence

Cja-Mir-150_3p*
mirBase accessionNone
Sequence 
35- CUGGUACAGGCCUGGGGGGCA -56
Get sequence