| MirGeneDB ID | Laf-Mir-150 |
|---|---|
| Family name | MIR-150 (all species) |
| Seed | CUCCCAA |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-150 Ami-Mir-150 Bta-Mir-150 Cfa-Mir-150 Cja-Mir-150 Cmi-Mir-150 Cpo-Mir-150 Dno-Mir-150 Dre-Mir-150 Eca-Mir-150 Ete-Mir-150 Gja-Mir-150 Gmo-Mir-150 Hsa-Mir-150 Lch-Mir-150 Loc-Mir-150 Mal-Mir-150 Mdo-Mir-150 Mml-Mir-150 Mmr-Mir-150 Mmu-Mir-150 Mun-Mir-150 Neu-Mir-150 Oan-Mir-150 Ocu-Mir-150 Pab-Mir-150 Pbv-Mir-150 Rno-Mir-150 Sha-Mir-150 Spt-Mir-150 Sto-Mir-150 Tni-Mir-150 Xla-Mir-150-P1 Xla-Mir-150-P2 Xtr-Mir-150 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010031.1: 8277467-8277523 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCACCGAGGCUCCUCUUCCUCGCGGCCCUGUCUCCCAACCCUUGUACCAGUGCUGUGCCUCGGACCCUGGUACAGGUGUGGGGGGCAGGGACCGGGGACCCCGCACCGUCAGGGCCUGet precursor sequence |
| Structure | 10 20 30 40 50 GCACCGAGGCUCCUCUUC--| G - AC U UG- UGUG CUC CGG CCCUGUCUCCCA CCU GUACCAG C \ GGG GCC GGGACGGGGGGU GGA CAUGGUC G C UCCGGGACUGCCACGCCCCA^ - A GU - CCA GCUC 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -1 on both arms. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-150_5p |
| mirBase accession | None |
| Sequence |
0- UCUCCCAACCCUUGUACCAGUGC -23
Get sequence
|
| Star sequence | Laf-Mir-150_3p* |
| mirBase accession | None |
| Sequence |
35- CCUGGUACAGGUGUGGGGGGCA -57
Get sequence
|
