MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010031.1: 8277467-8277523 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCGAGGCUCCUCUUCCUCGCGGCCCUGUCUCCCAACCCUUGUACCAGUGCUGUGCCUCGGACCCUGGUACAGGUGUGGGGGGCAGGGACCGGGGACCCCGCACCGUCAGGGCCU
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Structure
        10          20         30        40        50         
GCACCGAGGCUCCUCUUC--|  G   -            AC   U       UG- UGUG 
                    CUC CGG CCCUGUCUCCCA  CCU GUACCAG   C    \
                    GGG GCC GGGACGGGGGGU  GGA CAUGGUC   G    C
UCCGGGACUGCCACGCCCCA^  -   A            GU   -       CCA GCUC 
     110       100         90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-150_5p
mirBase accessionNone
Sequence 
0- UCUCCCAACCCUUGUACCAGUGC -23
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Star sequence

Laf-Mir-150_3p*
mirBase accessionNone
Sequence 
35- CCUGGUACAGGUGUGGGGGGCA -57
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