MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-150-P1

Family name MIR-150 (all species)
Seed CUCCCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-150-P2 
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xtr-Mir-150 
Node of Origin (locus) X. laevis
Node of Origin (family) Gnathostomata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 105619437-105619494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACAUUAUUAUAACGGUCCACUCUUUCUCUCUCCCAACCCUUGUACCAGAGUGAUAAUGGGAACUCUGGUACAGAGGAUGGCUGAAAGGAAGCAGUGGAGAAUCCGGCUACUGACGG
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Structure
        10         20         30        40        50        
GUACAUUAUUAUAACGG-      -|     C  UC   A  C            GAUA 
                  UCCACU CUUUCU UC  CCA CC UUGUACCAGAGU    A
                  AGGUGA GAAGGA AG  GGU GG GACAUGGUCUCA    U
GGCAGUCAUCGGCCUAAG      C^     A  UC   A  A            AGGG 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-150-P1_5p
mirBase accessionNone
Sequence 
0- UCUCCCAACCCUUGUACCAGAGU -23
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Star sequence

Xla-Mir-150-P1_3p*
mirBase accessionNone
Sequence 
35- UCUGGUACAGAGGAUGGCUGAAA -58
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