MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01000866.1: 340123-340180 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAGUGGGUCAGUUAACUCACCCCCCCUCUCUCCCAACCCUUGUACCAGUGAGUUCUGGACAGCACUGGCACAGCGGAUGGAGGGGAAGGAGGGAACGAGAUGUGACACAGAACCCA
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Structure
        10        20          30        40        50        
GGGAGUGGGUCAGUUAACUCA--|  C  C    UC   A  C    A      AGUUC 
                       CCC CC UCUC  CCA CC UUGU CCAGUG     U
                       GGG GG AGGG  GGU GG GACA GGUCAC     G
ACCCAAGACACAGUGUAGAGCAA^  A  A    GA   A  C    C      GACAG 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-150_5p (predicted)

mirBase accessionNone
Sequence
0- UCUCCCAACCCUUGUACCAGUG -22
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Star sequence

Spt-Mir-150_3p* (predicted)

mirBase accessionNone
Sequence
36- CUGGCACAGCGGAUGGAGGGGA -58
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