MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species Cod (Gadus morhua)
MiRBase ID
Paralogues
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_69: 1291-1351 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCGGCCUCUCUCGGCUCCGGCCCGGCCUCUCCCAAUCCUUGUACCAGUGUCGUGGUGUCGGCCGACGCUGGGCAGGCUUUGGGGGGCGCCGAGCGGAGGGCUCAGCAGCACAUGGGGG
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Structure
        10           20        30        40        50        60
GGCCCGGCCUCUCUCGG---|    G C    C        UC     A       CGUGGU 
                    CUCCG C CGGC UCUCCCAA  CUUGU CCAGUGU      G
                    GAGGC G GCCG GGGGGGUU  GGACG GGUCGCA      U
GGGGGUACACGACGACUCGG^    - A    C        UC     -       GCCGGC 
 .       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-150_5p
mirBase accessionNone
Sequence 
0- UCUCCCAAUCCUUGUACCAGUGU -23
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Star sequence

Gmo-Mir-150_3p*
mirBase accessionNone
Sequence 
39- GCUGGGCAGGCUUUGGGGGGCG -61
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