MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-150  Ami-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LepOcu1)		 LG8: 50265027-50265087 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCUCCCUCCAUCCUGCCCAGUCACCACCUCUCCCAACCCUGUACCAGUGUGUGAUUGACAGCAGACACCCUGGGCGGGGGCUGGGGAGGCGGGGCUCGGGGCUCUGCACAUGCUCAGAU
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Structure
        10          20         30         40        50        60
CUCCUCCCUCCAUCCUG--   -|   A  A    U    A-      A    U  GUGAUUG 
                   CCC AGUC CC CCUC CCCA  CCCUGU CCAG GU       A
                   GGG UCGG GG GGAG GGGU  GGGGCG GGUC CA       C
UAGACUCGUACACGUCUCG   C^   -  C    -    CG      -    C  CAGACGA 
 .       110       100         90         80         70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-150_5p
mirBase accessionNone
Sequence 
0- UCUCCCAACCCUGUACCAGUGU -22
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Star sequence

Loc-Mir-150_3p*
mirBase accessionNone
Sequence 
39- CCCUGGGCGGGGGCUGGGGAGG -61
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