MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-150

Family name MIR-150 (all species)
Seed CUCCCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-150
Paralogues
Orthologues Aca-Mir-150  Bta-Mir-150  Cfa-Mir-150  Cja-Mir-150  Cmi-Mir-150  Cpo-Mir-150  Dno-Mir-150  Dre-Mir-150  Eca-Mir-150  Ete-Mir-150  Gja-Mir-150  Gmo-Mir-150  Hsa-Mir-150  Laf-Mir-150  Lch-Mir-150  Loc-Mir-150  Mal-Mir-150  Mdo-Mir-150  Mml-Mir-150  Mmr-Mir-150  Mmu-Mir-150  Mun-Mir-150  Neu-Mir-150  Oan-Mir-150  Ocu-Mir-150  Pab-Mir-150  Pbv-Mir-150  Rno-Mir-150  Sha-Mir-150  Spt-Mir-150  Sto-Mir-150  Tni-Mir-150  Xla-Mir-150-P1  Xla-Mir-150-P2  Xtr-Mir-150 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711677.1: 79995-80054 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGGGGGUGGGCCUUCUCUGCCCCCCACUCUCUCCCAACCCUUGUACCAGUGUCAUGUUACUGGAACCCUGGUACAGAGGAUGGAUGAGAAGGAGGCGUGGGACCCCAGCACCUGCAGCC
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Structure
        10          20         30        40        50         
CAGGGGGUGGGCCUUCU-- UG -| C  AC    UC   A  C         U UCAUGU 
                   C  C CC CC  UCUC  CCA CC UUGUACCAG G      U
                   G  G GG GG  AGAG  GGU GG GACAUGGUC C      A
CCGACGUCCACGACCCCAG GU C^ A  A-    UA   A  A         C AAGGUC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-150_5p
mirBase accessionMIMAT0038180
Sequence 
0- UCUCCCAACCCUUGUACCAGUG -22
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Star sequence

Ami-Mir-150_3p*
mirBase accessionMIMAT0038181
Sequence 
38- CUGGUACAGAGGAUGGAUGAGA -60
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