MirGeneDB 3.0

MirGeneDB ID

Bko-Mir-76

Family name MIR-76 (all species)
Seed UCGUUGU
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Aae-Mir-76  Aga-Mir-76  Agr-Mir-76  Asu-Mir-76  Ava-Mir-76-P11  Ava-Mir-76-P12  Bge-Mir-76  Bpl-Mir-76  Cbr-Mir-76  Cel-Mir-76  Csc-Mir-76-P10a  Csc-Mir-76-P10b  Cte-Mir-76  Dan-Mir-76  Dgr-Mir-76  Dlo-Mir-76  Dma-Mir-76  Dme-Mir-76  Dmo-Mir-76  Dpu-Mir-76  Dsi-Mir-76  Dya-Mir-76  Eba-Mir-76  Efe-Mir-76  Esc-Mir-76  Gpa-Mir-76  Gsa-Mir-76  Hme-Mir-76  Hru-Mir-76  Isc-Mir-76  Lan-Mir-76-P1  Lan-Mir-76-P2  Lgi-Mir-76  Llo-Mir-76  Lpo-Mir-76-P3  Lpo-Mir-76-P4  Lpo-Mir-76-P5  Lpo-Mir-76-P6  Lpo-Mir-76-P7  Lpo-Mir-76-P8  Mgi-Mir-76  Mom-Mir-76  Npo-Mir-76  Obi-Mir-76  Ofu-Mir-76  Ovu-Mir-76  Pau-Mir-76  Pcr-Mir-76  Pdu-Mir-76  Pmi-Mir-76  Pve-Mir-76  Rph-Mir-76  Sma-Mir-76  Sme-Mir-76-P9a  Sme-Mir-76-P9b  Snu-Mir-76  Spu-Mir-76  Tca-Mir-76  Tur-Mir-76  War-Mir-76 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)
PJRA01000272.1: 1617167-1617242 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUUCUCAUCUAAAUGAUAGACUAUCUUCAGGUUUCACAGGCUUCGAGCAUUUUUGAAAAUCAACUUAAUAAGAUGUGAUUGUUCGUUGUCUUCGAAACCUGCAUUUGGUUUAUCUAAUUUCAUCAUUUAUCCA
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Structure
        10          20        30        40        50        60       
CAUCUUCUCAUCUAAAU--|        UCUU        AC    UU      UUUUUGAAAAUCAA 
                   GAUAGACUA    CAGGUUUC  AGGC  CGAGCA              C
                   CUAUUUGGU    GUCCAAAG  UCUG  GCUUGU              U
ACCUAUUUACUACUUUAAU^        UUAC        CU    UU      UAGUGUAGAAUAAU 
    130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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Star sequence

Bko-Mir-76_5p*

mirBase accessionNone
Sequence
0- CAGGUUUCACAGGCUUCGAGCA -22
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Mature sequence

Bko-Mir-76_3p

mirBase accessionNone
Sequence
54- UUCGUUGUCUUCGAAACCUGCA -76
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