Mir-76

MirGeneDB ID

Bko-Mir-76

Family name

MIR-76 (all species)

Seed

UCGUUGU

Species

Monogonont Rotifer 2 (Brachionus koreanus)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-76 Aga-Mir-76 Agr-Mir-76 Asu-Mir-76 Ava-Mir-76-P11 Ava-Mir-76-P12 Bge-Mir-76 Bpl-Mir-76 Cbr-Mir-76 Cel-Mir-76 Csc-Mir-76-P10a Csc-Mir-76-P10b Cte-Mir-76 Dan-Mir-76 Dgr-Mir-76 Dlo-Mir-76 Dma-Mir-76 Dme-Mir-76 Dmo-Mir-76 Dpu-Mir-76 Dsi-Mir-76 Dya-Mir-76 Eba-Mir-76 Efe-Mir-76 Esc-Mir-76 Gpa-Mir-76 Gsa-Mir-76 Hme-Mir-76 Hru-Mir-76 Isc-Mir-76 Lan-Mir-76-P1 Lan-Mir-76-P2 Lgi-Mir-76 Llo-Mir-76 Lpo-Mir-76-P3 Lpo-Mir-76-P4 Lpo-Mir-76-P5 Lpo-Mir-76-P6 Lpo-Mir-76-P7 Lpo-Mir-76-P8 Mgi-Mir-76 Mom-Mir-76 Npo-Mir-76 Obi-Mir-76 Ofu-Mir-76 Ovu-Mir-76 Pau-Mir-76 Pcr-Mir-76 Pdu-Mir-76 Pmi-Mir-76 Pve-Mir-76 Rph-Mir-76 Sma-Mir-76 Sme-Mir-76-P9a Sme-Mir-76-P9b Snu-Mir-76 Spu-Mir-76 Tca-Mir-76 Tur-Mir-76 War-Mir-76

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)

PJRA01000272.1: 1617167-1617242 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCUUCUCAUCUAAAUGAUAGACUAUCUUCAGGUUUCACAGGCUUCGAGCAUUUUUGAAAAUCAACUUAAUAAGAUGUGAUUGUUCGUUGUCUUCGAAACCUGCAUUUGGUUUAUCUAAUUUCAUCAUUUAUCCA

Get precursor sequence

Structure

        10          20        30        40        50        60       
CAUCUUCUCAUCUAAAU--|        UCUU        AC    UU      UUUUUGAAAAUCAA 
                   GAUAGACUA    CAGGUUUC  AGGC  CGAGCA              C
                   CUAUUUGGU    GUCCAAAG  UCUG  GCUUGU              U
ACCUAUUUACUACUUUAAU^        UUAC        CU    UU      UAGUGUAGAAUAAU 
    130       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To	To	To

Star sequence

Bko-Mir-76_5p*

mirBase accession

None

Sequence

0- CAGGUUUCACAGGCUUCGAGCA -22

Get sequence

Mature sequence

Bko-Mir-76_3p

mirBase accession

None

Sequence

54- UUCGUUGUCUUCGAAACCUGCA -76

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