MirGeneDB ID | Bpl-Mir-76 |
Family name |
MIR-76 (all species) |
Seed |
UCGUUGU |
Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-76
Aga-Mir-76
Agr-Mir-76
Asu-Mir-76
Ava-Mir-76-P11
Ava-Mir-76-P12
Bge-Mir-76
Bko-Mir-76
Cbr-Mir-76
Cel-Mir-76
Csc-Mir-76-P10a
Csc-Mir-76-P10b
Cte-Mir-76
Dan-Mir-76
Dgr-Mir-76
Dlo-Mir-76
Dma-Mir-76
Dme-Mir-76
Dmo-Mir-76
Dpu-Mir-76
Dsi-Mir-76
Dya-Mir-76
Eba-Mir-76
Efe-Mir-76
Esc-Mir-76
Gpa-Mir-76
Gsa-Mir-76
Hme-Mir-76
Hru-Mir-76
Isc-Mir-76
Lan-Mir-76-P1
Lan-Mir-76-P2
Lgi-Mir-76
Llo-Mir-76
Lpo-Mir-76-P3
Lpo-Mir-76-P4
Lpo-Mir-76-P5
Lpo-Mir-76-P6
Lpo-Mir-76-P7
Lpo-Mir-76-P8
Mgi-Mir-76
Mom-Mir-76
Npo-Mir-76
Obi-Mir-76
Ofu-Mir-76
Ovu-Mir-76
Pau-Mir-76
Pcr-Mir-76
Pdu-Mir-76
Pmi-Mir-76
Pve-Mir-76
Rph-Mir-76
Sma-Mir-76
Sme-Mir-76-P9a
Sme-Mir-76-P9b
Snu-Mir-76
Spu-Mir-76
Tca-Mir-76
Tur-Mir-76
War-Mir-76
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (Bpl_ASM1027981) |
QEOQ01000253.1: 314354-314431 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCGUGUAUGCCUUAAAUGAUAAACUGCCUGCAGGUUUCACAGACUUCGAGCAUUUUAAAAAAAAUCUUAUGAAAACGAUAUGAUUGUUCGUUGUCUUCGAAACCUGCAUUUGGUUUAUCUUUCUCAGCCAUGAGUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCGUGUAUGCCUUAAAU--| CC AC UU UUUUAAAAAAAAUCU
GAUAAACUG UGCAGGUUUC AGAC CGAGCA U
CUAUUUGGU ACGUCCAAAG UCUG GCUUGU A
CUCUGAGUACCGACUCUUU^ UU CU UU UAGUAUAGCAAAAGU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Mir-76_5p* |
mirBase accession | None |
Sequence |
0- CAGGUUUCACAGACUUCGAGCA -22
Get sequence
|
Mature sequence |
Bpl-Mir-76_3p |
mirBase accession | None |
Sequence |
56- UUCGUUGUCUUCGAAACCUGCA -78
Get sequence
|