MirGeneDB 2.1

MirGeneDB ID

Bpl-Mir-76

Family name MIR-76 (all species)
Seed UCGUUGU
Species Rotifer (Brachionus plicatilis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-76  Asu-Mir-76  Bge-Mir-76  Cbr-Mir-76  Cel-Mir-76  Cgi-Mir-76  Cte-Mir-76  Dan-Mir-76  Dma-Mir-76  Dme-Mir-76  Dmo-Mir-76  Dpu-Mir-76  Dsi-Mir-76  Dya-Mir-76  Efe-Mir-76  Esc-Mir-76  Hme-Mir-76  Isc-Mir-76  Lan-Mir-76-P1  Lan-Mir-76-P2  Lgi-Mir-76  Lpo-Mir-76-P3  Lpo-Mir-76-P4  Lpo-Mir-76-P5  Lpo-Mir-76-P6  Lpo-Mir-76-P7  Lpo-Mir-76-P8  Npo-Mir-76  Obi-Mir-76  Ovu-Mir-76  Pmi-Mir-76  Sme-Mir-76-P9a  Sme-Mir-76-P9b  Spu-Mir-76  Tca-Mir-76 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Bpl_ASM1027981)
QEOQ01000253.1: 314354-314431 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUGUAUGCCUUAAAUGAUAAACUGCCUGCAGGUUUCACAGACUUCGAGCAUUUUAAAAAAAAUCUUAUGAAAACGAUAUGAUUGUUCGUUGUCUUCGAAACCUGCAUUUGGUUUAUCUUUCUCAGCCAUGAGUCUC
Get precursor sequence
Structure
        10          20        30        40        50        60        
UCGUGUAUGCCUUAAAU--|        CC          AC    UU      UUUUAAAAAAAAUCU 
                   GAUAAACUG  UGCAGGUUUC  AGAC  CGAGCA               U
                   CUAUUUGGU  ACGUCCAAAG  UCUG  GCUUGU               A
CUCUGAGUACCGACUCUUU^        UU          CU    UU      UAGUAUAGCAAAAGU 
      130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bpl-Mir-76_5p*

mirBase accessionNone
Sequence
0- CAGGUUUCACAGACUUCGAGCA -22
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Mature sequence

Bpl-Mir-76_3p

mirBase accessionNone
Sequence
56- UUCGUUGUCUUCGAAACCUGCA -78
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