MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1993-P2

Family name MIR-1993 (all species)
Seed CGGAAAU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1993-P1 
Orthologues Agr-Mir-1993  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pdu-Mir-1993  Rph-Mir-1993  Sma-Mir-1993  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.1652592: 367-429 [+]
Precursor
(pre-Mir +30nt flank)
AAUGAAGAUGAAACGGCUGUGGUGAUUGCAUCGGAAAUCGCGGCAGAAUACCUUGCUAAUUGGAUAUCGGUAUUAUGCUGUAAUUUCGCGAGUCAGUCUUACAGGAUGGCAUCGUUAACUGCU
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Structure
        10           20        30         40        50        60
AAUGAAGAUGAAACGGC---|    U     CA   -     CG     G      UUGCUAA 
                    UGUGG GAUUG  UCG GAAAU  CGGCA AAUACC       U
                    ACAUU CUGAC  AGC CUUUA  GUCGU UUAUGG       U
UCGUCAAUUGCUACGGUAGG^    -     UG   G     AU     A      CUAUAGG 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Efe-Mir-1993-P2_5p
mirBase accessionNone
Sequence 
0- UCGGAAAUCGCGGCAGAAUACC -22
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Co-mature sequence

Efe-Mir-1993-P2_3p
mirBase accessionNone
Sequence 
40- UAUUAUGCUGUAAUUUCGCGAGU -63
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