MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 57292929-57292986 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUAUCAAGGACAGCAGGCAGCAAGUUUCGGGAAUAUCAGUGUUCUAUGCCGUUUGUUGAAGGUAUUAUGCUGUUAUUCACGAGAUGAGCUGUGGUCAUCUACUGAAGAAGAUAU
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Structure
        10        20          30        40        50         
UUCCUUAUCAAGGACAGCAG--|    AA      G     U      UCU     GUUU 
                      GCAGC  GUUUCG GAAUA CAGUGU   AUGCC    G
                      UGUCG  UAGAGC CUUAU GUCGUA   UAUGG    U
UAUAGAAGAAGUCAUCUACUGG^    AG      A     U      U--     AAGU 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGGGAAUAUCAGUGUUCUAUGCC -24
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Mature sequence

Pdu-Mir-1993_3p
mirBase accessionNone
Sequence 
36- UAUUAUGCUGUUAUUCACGAGA -58
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