MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-1993

Family name MIR-1993 (all species)
Seed CGUGAAU
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046179.1: 2555927-2555987 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAAAAAAUGAAUAGUGACUUUGUACUUUCGUGAAUCUUAGCGUAAUGUCGUUCAUUUGACUCGGGAUAUUAUGCUAAGAUAAACGUGAGCUCCAGAGUCACCUUCGCCACGAACGCAG
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Structure
        10         20         30        40        50          
AGGAAAAAAAUGAAUAG-        UA-|  U   GA                GUUCAUU 
                  UGACUUUG   CUU CGU  AUCUUAGCGUAAUGUC       \
                  ACUGAGAC   GAG GCA  UAGAAUCGUAUUAUAG       U
GACGCAAGCACCGCUUCC        CUC^  U   AA                GGCUCAG 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-1993_5p
mirBase accessionNone
Sequence 
0- UCGUGAAUCUUAGCGUAAUGUC -22
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Co-mature sequence

Dma-Mir-1993_3p
mirBase accessionNone
Sequence 
39- UAUUAUGCUAAGAUAAACGUGA -61
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