MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000353.1: 622405-622474 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGGGUCAAAAUUAAUCAAGAUAAAAUCUCGUUAAAUUUAGCCUAAUGUGUAGAUUUAAGAUAUUUAGCUUGUCAUAUUAUGCUGAAUUUUUCGAUCUUUUAUCUAAAUAAAAUCAUCCGUUCCGCAU
Get precursor sequence
Structure
        10        20           30        40        50        60    
UUUUGGGUCAAAAUUAAUCA---|       UC   UU         C       UAGAUUUAAGA 
                       AGAUAAAA  UCG  AAAUUUAGC UAAUGUG           \
                       UCUAUUUU  AGC  UUUAAGUCG AUUAUAC           U
UACGCCUUGCCUACUAAAAUAAA^       CU   UU         U       UGUUCGAUUUA 
.       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To To
Star sequence

Bko-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGUUAAAUUUAGCCUAAUGUG -22
Get sequence
Mature sequence

Bko-Mir-1993_3p
mirBase accessionNone
Sequence 
47- UAUUAUGCUGAAUUUUUCGAUCU -70
Get sequence