MirGeneDB ID | Pcr-Mir-1993-P14 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Tiger flatworm (Prostheceraeus crozieri ) |
MiRBase ID |
|
Paralogues |
Pcr-Mir-1993-P15
|
Orthologues |
Agr-Mir-1993
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Egr-Mir-1993
Esc-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pdu-Mir-1993
Rph-Mir-1993
Sma-Mir-1993
Snu-Mir-1993
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
P. crozeri
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_907163375.1_PROCRO_GENOME_genomic) |
CAJQUW010012413.1: 13563-13624 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCACGAAUGGAUGAUUGACUCAACCUUUUCGUGGAUUAUCAGCAUAAUGCAUAGUUCUCCAAUGCUCCAGUAUUAUGCUGAAAUUCACGAGUUGAUCGAGUAUACGCUUCAUUUUGCCCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCACGAAUGGAUGAUUG--| AACCUU A AUAGUUCUC
ACUC UUCGUGGAUU UCAGCAUAAUGC \
UGAG GAGCACUUAA AGUCGUAUUAUG C
UACCCGUUUUACUUCGCAUA^ CUAGUU - ACCUCGUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pcr-Mir-1993-P14_5p* |
mirBase accession | None |
Sequence |
0- CGUGGAUUAUCAGCAUAAUGCA -22
Get sequence
|
Mature sequence |
Pcr-Mir-1993-P14_3p |
mirBase accession | None |
Sequence |
41- UAUUAUGCUGAAAUUCACGAG -62
Get sequence
|