MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-60
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(ce11)		 chrII: 6328717-6328778 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAUUCUACUCGAAAACCGCUUGUUCUUGAACUGGAAGAGUGCCAUAAAAUCAUGACAAAGUACGUGAUAUUAUGCACAUUUUCUAGUUCAAGACUUGAGAAAUCGGUUAACUGUUUUUGA
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Structure
        10        20          30        40         50        60
CAUAUUCUACUCGAAAACCG-    U-               -|   C    A   AUGACA 
                     CUUG  UCUUGAACUGGAAGA GUGC AUAA AUC      A
                     GAGU  AGAACUUGAUCUUUU CACG UAUU UAG      A
AGUUUUUGUCAAUUGGCUAAA    UC               A^   -    A   UGCAUG 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-1993_5p*
mirBase accessionMIMAT0015102
Sequence 
0- AACUGGAAGAGUGCCAUAAAAUC -23
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Proposed targets microrna.org: MIMAT0015102
Mature sequence

Cel-Mir-1993_3p
mirBase accessionMIMAT0000032
Sequence 
39- UAUUAUGCACAUUUUCUAGUUCA -62
Get sequence
Proposed targets microrna.org: MIMAT0000032
TargetScanWorm: cel-miR-60