MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-1993
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609838.1: 16707574-16707636 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCCAGCUCGGCUGUCGGCGGCGCCAACCGCGUGAACACAAGCGUGAUACCGUGCUUGGCUGAACUCGGGCAUUAUGCUAGUGUUCGCGGGGCUGGUUGCGCCUGGACUCACACAUGCGAGU
Get precursor sequence
Structure
        10          20        30        40        50         60
UUUCCAGCUCGGCUGUC--    GC    A  G         A        A-| GUGCUUG 
                   GGCG  GCCA CC CGUGAACAC AGCGUGAU  CC       G
                   CCGC  UGGU GG GCGCUUGUG UCGUAUUA  GG       C
UGAGCGUACACACUCAGGU    GU    C  G         A        CG^ CUCAAGU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Star sequence

Isc-Mir-1993_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCGUGAACACAAGCGUGAUACC -22
Get sequence
Mature sequence

Isc-Mir-1993_3p
mirBase accessionMIMAT0016929
Sequence 
41- CAUUAUGCUAGUGUUCGCGGGG -63
Get sequence