MirGeneDB 3.0
MirGeneDB ID

Ofu-Mir-1993-P13

Family name MIR-1993 (all species)
Seed CGGGAAU
Species tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-1993-P12 
Orthologues Agr-Mir-1993  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pdu-Mir-1993  Rph-Mir-1993  Sma-Mir-1993  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Protostomia
Genome context
(GCA_903813345.2_Owenia)		 CAIIXF020000001.1: 8469791-8469848 [+]
Precursor
(pre-Mir +30nt flank)
UUCAUCAACAUGAUCCAAGUGCAAUUAUUUUCGGGAAUAGUGGCAUUAUAUUGUGUUUCAAUCAAAUAUUAUGCUGCUAUUCACGAGGUGCAAGGCACUAUUCAACUUGAGACGUGCG
Get precursor sequence
Structure
        10          20        30        40        50        
UUCAUCAACAUGAUCCA--|    AAUUAU     G      UG    U     GUGUU 
                   AGUGC      UUUCG GAAUAG  GCAU AUAUU     U
                   UCACG      GGAGC CUUAUC  CGUA UAUAA     C
GCGUGCAGAGUUCAACUUA^    GAACGU     A      GU    U     ACUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ow Ow
Mature sequence

Ofu-Mir-1993-P13_5p
mirBase accessionNone
Sequence 
0- UCGGGAAUAGUGGCAUUAUAUU -22
Get sequence
Co-mature sequence

Ofu-Mir-1993-P13_3p
mirBase accessionNone
Sequence 
36- UAUUAUGCUGCUAUUCACGAGG -58
Get sequence