MirGeneDB ID | Ofu-Mir-1993-P13 |
Family name |
MIR-1993 (all species) |
Seed |
CGGGAAU |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-1993-P12
|
Orthologues |
Agr-Mir-1993
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Egr-Mir-1993
Esc-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pdu-Mir-1993
Rph-Mir-1993
Sma-Mir-1993
Snu-Mir-1993
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
O. fusiformis
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 8469791-8469848 [+]
|
Precursor (pre-Mir +30nt flank) |
UUCAUCAACAUGAUCCAAGUGCAAUUAUUUUCGGGAAUAGUGGCAUUAUAUUGUGUUUCAAUCAAAUAUUAUGCUGCUAUUCACGAGGUGCAAGGCACUAUUCAACUUGAGACGUGCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCAUCAACAUGAUCCA--| AAUUAU G UG U GUGUU
AGUGC UUUCG GAAUAG GCAU AUAUU U
UCACG GGAGC CUUAUC CGUA UAUAA C
GCGUGCAGAGUUCAACUUA^ GAACGU A GU U ACUAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ofu-Mir-1993-P13_5p |
mirBase accession | None |
Sequence |
0- UCGGGAAUAGUGGCAUUAUAUU -22
Get sequence
|
Co-mature sequence |
Ofu-Mir-1993-P13_3p |
mirBase accession | None |
Sequence |
36- UAUUAUGCUGCUAUUCACGAGG -58
Get sequence
|