MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-2162
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 OU426850.1: 27549549-27549604 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCGUUUGGAUGGACCUCUCUAGGGGAUGAGUGGGAUGGUUGCAUAUAUACAAUGCUGACAAUGUAUUAUGCAACGUUUCACUCUACCCCAGGGACUCUACUUCAACCUACAUAG
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Structure
        10           20        30        40        50        
UGUCGUUUGGAUGGACC---|    A    AU     GG   G       U     AUGC 
                    UCUCU GGGG  GAGUG  AUG UUGCAUA AUACA    U
                    AGGGA CCCC  CUCAC  UGC AACGUAU UAUGU    G
GAUACAUCCAACUUCAUCUC^    -    AU     UU   -       -     AACA 
    110       100         90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Sma-Mir-1993_5p*
mirBase accessionMIMAT0033665
Sequence 
0- AGUGGGAUGGUUGCAUAUAUACA -23
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Mature sequence

Sma-Mir-1993_3p
mirBase accessionMIMAT0033666
Sequence 
35- UAUUAUGCAACGUUUCACUCU -56
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