MirGeneDB ID | Sma-Mir-1993 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Blood fluke (Schistosoma mansoni) |
MiRBase ID |
sma-mir-2162
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Paralogues |
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Orthologues |
Agr-Mir-1993
Ava-Mir-1993-P10
Ava-Mir-1993-P11
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Egr-Mir-1993
Esc-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ofu-Mir-1993-P12
Ofu-Mir-1993-P13
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pcr-Mir-1993-P14
Pcr-Mir-1993-P15
Pdu-Mir-1993
Pve-Mir-1993-P8
Pve-Mir-1993-P9
Rph-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
Snu-Mir-1993
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (GCA_000237925.5_SM_V9_genomic) |
OU426850.1: 27549549-27549604 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGUCGUUUGGAUGGACCUCUCUAGGGGAUGAGUGGGAUGGUUGCAUAUAUACAAUGCUGACAAUGUAUUAUGCAACGUUUCACUCUACCCCAGGGACUCUACUUCAACCUACAUAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCGUUUGGAUGGACC---| A AU GG G U AUGC
UCUCU GGGG GAGUG AUG UUGCAUA AUACA U
AGGGA CCCC CUCAC UGC AACGUAU UAUGU G
GAUACAUCCAACUUCAUCUC^ - AU UU - - AACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
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Star sequence |
Sma-Mir-1993_5p* |
mirBase accession | MIMAT0033665 |
Sequence |
0- AGUGGGAUGGUUGCAUAUAUACA -23
Get sequence
|
Mature sequence |
Sma-Mir-1993_3p |
mirBase accession | MIMAT0033666 |
Sequence |
35- UAUUAUGCAACGUUUCACUCU -56
Get sequence
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