MirGeneDB ID | Snu-Mir-1993 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Peanut worm (Sipunculus nudus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1993
Ava-Mir-1993-P10
Ava-Mir-1993-P11
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Egr-Mir-1993
Esc-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ofu-Mir-1993-P12
Ofu-Mir-1993-P13
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pcr-Mir-1993-P14
Pcr-Mir-1993-P15
Pdu-Mir-1993
Pve-Mir-1993-P8
Pve-Mir-1993-P9
Rph-Mir-1993
Sma-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049309.1: 6094964-6095021 [-]
|
Precursor (pre-Mir +30nt flank) |
AGAUUACAAACAACAGGGGGCAGCACAGUGUCGGGAAUCGUGGCAUGAUCCUGUGUAUAAUGCAAGUAUUAUGCUGCUAUUCACGAGGCCAACUGCUUACUUACGACACCAACCAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAUUACAAACAACAGG---| CACA G G C UG C GUGUA
GGGCAG GU UCG GAAU G GCAUGAU CU U
UUCGUC CG AGC CUUA C CGUAUUA GA A
AGGACCAACCACAGCAUUCA^ AAC- G A U GU U ACGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Snu-Mir-1993_5p* |
mirBase accession | None |
Sequence |
0- UCGGGAAUCGUGGCAUGAUCCU -22
Get sequence
|
Mature sequence |
Snu-Mir-1993_3p |
mirBase accession | None |
Sequence |
36- UAUUAUGCUGCUAUUCACGAGG -58
Get sequence
|