MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1993-P6

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-1993
Paralogues Sme-Mir-1993-P7 
Orthologues Agr-Mir-1993  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pdu-Mir-1993  Rph-Mir-1993  Sma-Mir-1993  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000027_dd_Smes_g4_27: 2971604-2971665 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUGGAAAUUAACCUUCGAUAUGUAAUUGAUGAAUCAACAGUAUAAAAACGGAGUACAACAAAUAUUCGUAUUAUGCUGUUAUUCAUGAGUUACUAUGGAUUUAUCGUCGAUUAAAAAUA
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Structure
        10           20        30        40        50        60 
AUUUUGGAAAUUAACCU---| G   U      G      C          AA  GGAGUACA 
                    UC AUA GUAAUU AUGAAU AACAGUAUAA  AC        A
                    AG UAU CAUUGA UACUUA UUGUCGUAUU  UG        C
AUAAAAAUUAGCUGCUAUUU^ G   -      G      -          A-  CUUAUAAA 
120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-1993-P6_5p*
mirBase accessionMIMAT0012140
Sequence 
0- GAUGAAUCAACAGUAUAAAAAC -22
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Mature sequence

Sme-Mir-1993-P6_3p
mirBase accessionMIMAT0011241
Sequence 
41- UAUUAUGCUGUUAUUCAUGAG -62
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