MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000002.1: 73340609-73340668 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUUGUGGUCCCGAUGGUCCUCCUUACUUUCGGGAAUAUUGGCAUAAUGCAGUUUACAUGUGAGUCGUAUUAUGCUGCUAUUCACGAGACGCGAGGGCCGAUAACGUCGACACAGAAAC
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Structure
        10            20        30        40        50         
AGAUUGUGGUCCCGAUG----|     CUUAC     G     UU          AGUUUAC 
                     GUCCUC     UUUCG GAAUA  GGCAUAAUGC       A
                     CGGGAG     AGAGC CUUAU  UCGUAUUAUG       U
CAAAGACACAGCUGCAAUAGC^     CGC--     A     CG          CUGAGUG 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
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To To
Star sequence

Hru-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGGGAAUAUUGGCAUAAUGCA -22
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Mature sequence

Hru-Mir-1993_3p
mirBase accessionNone
Sequence 
38- UAUUAUGCUGCUAUUCACGAGA -60
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