Mir-1993

MirGeneDB ID

Gsa-Mir-1993

Family name

MIR-1993 (all species)

Seed

AUUAUGC

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-1993

Paralogues

Orthologues

Agr-Mir-1993 Ava-Mir-1993-P10 Ava-Mir-1993-P11 Bko-Mir-1993 Bpl-Mir-1993 Cbr-Mir-1993 Cel-Mir-1993 Csc-Mir-1993 Cte-Mir-1993 Dgr-Mir-1993 Dma-Mir-1993 Dpu-Mir-1993 Eba-Mir-1993 Efe-Mir-1993-P1 Efe-Mir-1993-P2 Egr-Mir-1993 Esc-Mir-1993 Gsp-Mir-1993 Hru-Mir-1993 Isc-Mir-1993 Lan-Mir-1993 Lgi-Mir-1993 Llo-Mir-1993 Lpo-Mir-1993-P3 Lpo-Mir-1993-P4 Lpo-Mir-1993-P5 Mgi-Mir-1993 Mom-Mir-1993 Npo-Mir-1993 Obi-Mir-1993 Ofu-Mir-1993-P12 Ofu-Mir-1993-P13 Ovu-Mir-1993 Pau-Mir-1993 Pca-Mir-1993 Pcr-Mir-1993-P14 Pcr-Mir-1993-P15 Pdu-Mir-1993 Pve-Mir-1993-P8 Pve-Mir-1993-P9 Rph-Mir-1993 Sma-Mir-1993 Sme-Mir-1993-P6 Sme-Mir-1993-P7 Snu-Mir-1993 Tur-Mir-1993 War-Mir-1993

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006952422: 6312-6376 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGCUAUAUAAUUCACCUACCUUAAGAAUGAGUGGAAAACUUGCAUAACUACAGUUAAAGAUUAUUAUUCUUGUAUUAUGCAAUAUUUCACUCGUCGAUCAAGGCUAAACACAAUAACUCUGAAU

Get precursor sequence

Structure

        10          20          30        40        50        60  
UCGCUAUAUAAUUCACCUA--    AA--| A         AAC        C    GUUAAAGA 
                     CCUU    GA UGAGUGGAA   UUGCAUAA UACA        U
                     GGAA    CU GCUCACUUU   AACGUAUU AUGU        U
UAAGUCUCAAUAACACAAAUC    CUAG^ -         AU-        -    UCUUAUUA 
   120       110       100         90         80         70