MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587302.1: 2071519-2071583 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACCAGCCAAGUUUGAAAUGAUCUUGACUUGACGUAAUCUAGCAUCAAUUUAUCUGCUAAUUUAGUAAUUGAUAUUAUGCUAGAUUUCGUGAGGUUAAGACAUGCCUUUAUACAUCCGUAUGUC
Get precursor sequence
Structure
        10           20        30        40        50        60  
UGACCAGCCAAGUUUGAA---|  A         G   U          C   UUAUCUGCUAA 
                     AUG UCUUGACUU ACG AAUCUAGCAU AAU           U
                     UAC AGAAUUGGA UGC UUAGAUCGUA UUA           U
CUGUAUGCCUACAUAUUUCCG^  -         G   U          -   UAGUUAAUGAU 
   120       110        100        90        80         70
Deep sequencing
Go to detailed chart
Comment3' offset on the 5p arm looks incorrect on MirMiner; mfold supports a different structure, on which the arm here is based. Both possible arms have supporting reads
3' NTU No
MotifsNo
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr
Star sequence

Tur-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UGACGUAAUCUAGCAUCAAUUU -22
Get sequence
Mature sequence

Tur-Mir-1993_3p
mirBase accessionNone
Sequence 
43- UAUUAUGCUAGAUUUCGUGAGG -65
Get sequence