MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-1993-P4

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1993-P3  Lpo-Mir-1993-P5 
Orthologues Agr-Mir-1993  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pdu-Mir-1993  Rph-Mir-1993  Sma-Mir-1993  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667397.1: 138021-138081 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGUAUUUCAACUAGAGCUACAGGCUUUUUCGCGAAGGCUAGCACAAUAAUGUUAAUAUUUUCGAUCAUAUUAUGCUAGUGUUCGUGGGUAAGAGUGAGGCUCUUAACGGCUAUGGAAAC
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Structure
        10          20        30        40        50        60
UAUGUAUUUCAACUAGA--|  A  GG   U        G       C    A  UUAAUA 
                   GCU CA  CUU UUCGCGAA GCUAGCA AAUA UG      U
                   CGG GU  GAA GGGUGCUU UGAUCGU UUAU AC      U
CAAAGGUAUCGGCAAUUCU^  A  GA   U        G       A    -  UAGCUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-1993-P4_5p*
mirBase accessionNone
Sequence 
0- UCGCGAAGGCUAGCACAAUAAUG -23
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Mature sequence

Lpo-Mir-1993-P4_3p
mirBase accessionNone
Sequence 
39- UAUUAUGCUAGUGUUCGUGGGU -61
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