MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)		 scaffold506: 136468-136528 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGGACCACGAUUUGAUUGCCCUAAAAUUUCGGGAAUAGCAGUAAAAUGCAUUGAAGUAUACAUCCUGUAUUAUGCUGUUAUUCACGAGAAGGAAGGGUUUGUGUCUACUUAAGAUUGCG
Get precursor sequence
Structure
        10          20        30        40        50          
ACAGGACCACGAUUUGAUU--|    AAAA     G           A      UUGAAGU 
                     GCCCU    UUUCG GAAUAGCAGUA AAUGCA       \
                     UGGGA    AGAGC CUUAUUGUCGU UUAUGU       A
GCGUUAGAAUUCAUCUGUGUU^    AGGA     A           A      CCUACAU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGGGAAUAGCAGUAAAAUGCA -22
Get sequence
Mature sequence

Mgi-Mir-1993_3p
mirBase accessionNone
Sequence 
39- UAUUAUGCUGUUAUUCACGAGA -61
Get sequence