MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-1993-P11

Family name MIR-1993 (all species)
Seed CGUGAAG
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-1993-P10 
Orthologues Agr-Mir-1993  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pdu-Mir-1993  Rph-Mir-1993  Sma-Mir-1993  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075494.1: 7959653-7959714 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAGCAUACUAUUGAAGGUGUAAAAUCUACUCGUGAAGACCAGCAUGAUUCGUUGAAAGAUAUGACUCGUAUUAUGCUGCAAUUUUACGAUAUGAUUUACAUCAAAAUUGGAAAGAUUCUAU
Get precursor sequence
Structure
        10           20        30        40         50          
CGAGCAUACUAUUGAAG---|      A  UAC        AC-         U  UUGAAAG 
                    GUGUAAA UC   UCGUGAAG   CAGCAUGAU CG       \
                    UACAUUU AG   AGCAUUUU   GUCGUAUUA GC       A
UAUCUUAGAAAGGUUAAAAC^      -  UAU        AAC         U  UCAGUAU 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To To
Mature sequence

Ava-Mir-1993-P11_5p
mirBase accessionNone
Sequence 
0- UCGUGAAGACCAGCAUGAUUCG -22
Get sequence
Star sequence

Ava-Mir-1993-P11_3p*
mirBase accessionNone
Sequence 
39- UAUUAUGCUGCAAUUUUACGAUA -62
Get sequence