MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-60
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CB4)		 II: 9414189-9414250 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAAUAUUCUAGAAACCUCUUGUUCUUGAGCUGGAAAGGUGACAUAAAAUCAUGUCCAAGCACGCGAUAUUAUGCACAUUUUCUAGUCCAAGACUUGAUUAAUAAUGGUUUCAUUUUUGA
Get precursor sequence
Structure
        10           20        30        40         50        60
UAUUAAUAUUCUAGAAACC---| UU  U    AG        -   A     A   AUGUCC 
                      UC  GU CUUG  CUGGAAAG GUG CAUAA AUC      A
                      AG  CA GAAC  GAUCUUUU CAC GUAUU UAG      A
AGUUUUUACUUUGGUAAUAAUU^ UU  -    CU        A   -     A   CGCACG 
120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- AGCUGGAAAGGUGACAUAAAAUC -23
Get sequence
Mature sequence

Cbr-Mir-1993_3p
mirBase accessionMIMAT0000479
Sequence 
39- UAUUAUGCACAUUUUCUAGUCCA -62
Get sequence