MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1993
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_421: 174512-174569 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGUUUGAUGAUUAUAACCUCGUGCAUUUCGGGAAUUUCGGCAUCAUUCUGUUGGCUUAACUAGUAUUAUGCUGAUAUUCACGAGAUGAUUUGAGGACUUACACCUGCAGCAAUCG
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Structure
        10         20         30        40        50        
AGAUGUUUGAUGAUUAUAA-     UG-|      G    U       C  U  GUUGG 
                    CCUCG   CAUUUCG GAAU UCGGCAU AU CU     C
                    GGAGU   GUAGAGC CUUA AGUCGUA UA GA     U
GCUAACGACGUCCACAUUCA     UUA^      A    U       U  U  UCAAU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGGGAAUUUCGGCAUCAUUCU -22
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Mature sequence

Cte-Mir-1993_3p
mirBase accessionMIMAT0009701
Sequence 
36- UAUUAUGCUGAUAUUCACGAGA -58
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