MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-142-P4-v1

Family name MIR-142 (all species)
Seed AUAAAGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172599.1: 181697-181757 [-]
Precursor
(pre-Mir +30nt flank)
GCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGA
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Structure
        10          20        30        40        50          
GCAGCUGUACUUAAGGA--|    G                 A         UAAACGCUC 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AGCAGCGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-142-P4-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Gja-Mir-142-P4-v1_3p*
mirBase accessionNone
Sequence 
40- UAGUGUUUCCUACUUUAUGGA -61
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