Mir-142-P4-v4

MirGeneDB ID

Tni-Mir-142-P4-v4

Family name

MIR-142 (all species)

Seed

CCAUAAA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-142b

Paralogues

Tni-Mir-142-P2-v1 Tni-Mir-142-P2-v2 Tni-Mir-142-P2-v3 Tni-Mir-142-P2-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3

Orthologues

Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v3 Aca-Mir-142-P4-v4 Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Dre-Mir-142-P4-v1 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3 Gmo-Mir-142-P4-v4 Lch-Mir-142-P4 Mal-Mir-142-P4-v1 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

16: 3999098-3999161 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P4-v4)

Mir-142-P4-v4 16: 3999098-3999161 [+] UCSC Ensembl
Mir-142-P4-v1 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P4-v2 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P4-v3 16: 3999100-3999159 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAGAACCUUCUGAUGUACAGUGCUGUCACCCAUAAAGUAGAAAGCACUACUAAACGUCUUUACACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGCACUGUUGGCCGCGGAGAAACUCAAC

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACCAGAACCUUCUGAUGU--|      UG   C           A         UAAACGUC 
                    ACAGUGC  UCA CCAUAAAGUAG AAGCACUAC        U
                    UGUCACG  AGU GGUAUUUCAUC UUUGUGAUG        U
CAACUCAAAGAGGCGCCGGU^      UG   A           C         UGACACAU 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-142-P4-v4_5p

mirBase accession

MIMAT0002946

Sequence

0- CCCAUAAAGUAGAAAGCACUAC -22

Get sequence

Star sequence

Tni-Mir-142-P4-v4_3p*

mirBase accession

None

Sequence

42- AGUGUUUCCUACUUUAUGGAUG -64

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