Mir-142-P4-v1

MirGeneDB ID

Dre-Mir-142-P4-v1

Family name

MIR-142 (all species)

Seed

AUAAAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-142b

Paralogues

Dre-Mir-142-P2-v1 Dre-Mir-142-P2-v2 Dre-Mir-142-P2-v3 Dre-Mir-142-P2-v4 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3

Orthologues

Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v3 Aca-Mir-142-P4-v4 Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3 Gmo-Mir-142-P4-v4 Lch-Mir-142-P4 Mal-Mir-142-P4-v1 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3 Tni-Mir-142-P4-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr15: 15383910-15383969 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P4-v1)

Mir-142-P4-v1 chr15: 15383910-15383969 [-] UCSC Ensembl
Mir-142-P4-v2 chr15: 15383910-15383969 [-] UCSC Ensembl
Mir-142-P4-v3 chr15: 15383910-15383969 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGGAAGGUCAGAGGUACAGUGCAGUCACUCAUAAAGUAGACAGCACUACUAAACUUCUCUACACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCGGCGAUGGACAGUC

Get precursor sequence

Structure

        10          20        30        40        50         
CGGGAAGGUCAGAGGUA--|      G   CU          AC        UAAACUUC 
                   CAGUGCA UCA  CAUAAAGUAG  AGCACUAC        U
                   GUCAUGU AGU  GUAUUUCAUC  UUGUGAUG        C
CUGACAGGUAGCGGCGGUU^      G   AG          CU        UGACACAU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-142-P4-v1_5p

mirBase accession

MIMAT0001839

Sequence

0- CAUAAAGUAGACAGCACUACU -21

Get sequence

Proposed targets

TargetScanFish: dre-miR-142b-5p

Star sequence

Dre-Mir-142-P4-v1_3p*

mirBase accession

None

Sequence

39- UAGUGUUUCCUACUUUAUGGA -60

Get sequence