MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-142-P4-v3

Family name MIR-142 (all species)
Seed GUAGUGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-142b
Paralogues Dre-Mir-142-P2-v1  Dre-Mir-142-P2-v2  Dre-Mir-142-P2-v3  Dre-Mir-142-P2-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr15: 15383910-15383969 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v3)
Mir-142-P4-v1 chr15: 15383910-15383969 [-] UCSC Ensembl
Mir-142-P4-v2 chr15: 15383910-15383969 [-] UCSC Ensembl
Mir-142-P4-v3 chr15: 15383910-15383969 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGAAGGUCAGAGGUACAGUGCAGUCACUCAUAAAGUAGACAGCACUACUAAACUUCUCUACACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCGGCGAUGGACAGUC
Get precursor sequence
Structure
        10          20        30        40        50         
CGGGAAGGUCAGAGGUA--|      G   CU          AC        UAAACUUC 
                   CAGUGCA UCA  CAUAAAGUAG  AGCACUAC        U
                   GUCAUGU AGU  GUAUUUCAUC  UUGUGAUG        C
CUGACAGGUAGCGGCGGUU^      G   AG          CU        UGACACAU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-142-P4-v3_5p*

mirBase accessionMIMAT0001839
Sequence
0- CAUAAAGUAGACAGCACUACUAA -23
Get sequence
Proposed targets TargetScanFish: dre-miR-142b-5p
Mature sequence

Dre-Mir-142-P4-v3_3p

mirBase accessionNone
Sequence
37- UGUAGUGUUUCCUACUUUAUGGA -60
Get sequence