MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-142-P4-v4

Family name MIR-142 (all species)
Seed CCAUAAA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172599.1: 181695-181759 [-]
Precursor
(pre-Mir +30nt flank)
CGGCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGAUG
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Structure
        10          20        30        40        50        60  
CGGCAGCUGUACUUAAGG--|     G                 A         UAAACGCUC 
                    ACAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                    UGUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
GUAGCAGCGGAGGCAACGAG^     G                 C         UGAACCUGU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-142-P4-v4_5p
mirBase accessionNone
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Gja-Mir-142-P4-v4_3p*
mirBase accessionNone
Sequence 
43- AGUGUUUCCUACUUUAUGGAUG -65
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