Mir-142-P4-v4

MirGeneDB ID

Gmo-Mir-142-P4-v4

Family name

MIR-142 (all species)

Seed

GUGUUUC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-142-2

Paralogues

Gmo-Mir-142-P2-v1 Gmo-Mir-142-P2-v2 Gmo-Mir-142-P2-v3 Gmo-Mir-142-P2-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3

Orthologues

Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v3 Aca-Mir-142-P4-v4 Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Dre-Mir-142-P4-v1 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Lch-Mir-142-P4 Mal-Mir-142-P4-v1 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3 Tni-Mir-142-P4-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig391504: 963-1026 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P4-v4)

Mir-142-P4-v4 contig391504: 963-1026 [-] UCSC Ensembl
Mir-142-P4-v1 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v2 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v3 contig391504: 965-1024 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCAUGGAUCUACAAAUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUCAAUGCAAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGAUGGCUGCAGGUGAUCAACGG

Get precursor sequence

Structure

        10          20        30        40        50        60 
GACCAUGGAUCUACAAAUA--|     UG   C           A         UAAACUUC 
                     CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                     GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        A
GGCAACUAGUGGACGUCGGUA^     UG   A           C         UGAAACGU 
  120       110       100        90        80        70