MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-142-P4-v4

Family name MIR-142 (all species)
Seed GUGUUUC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-142-2
Paralogues Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig391504: 963-1026 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v4)
Mir-142-P4-v4 contig391504: 963-1026 [-] UCSC Ensembl
Mir-142-P4-v1 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v2 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v3 contig391504: 965-1024 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCAUGGAUCUACAAAUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUCAAUGCAAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGAUGGCUGCAGGUGAUCAACGG
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Structure
        10          20        30        40        50        60 
GACCAUGGAUCUACAAAUA--|     UG   C           A         UAAACUUC 
                     CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                     GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        A
GGCAACUAGUGGACGUCGGUA^     UG   A           C         UGAAACGU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-142-P4-v4_5p*

mirBase accessionMIMAT0044045
Sequence
0- CCCAUAAAGUAGAAAGCACUAC -22
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Mature sequence

Gmo-Mir-142-P4-v4_3p

mirBase accessionMIMAT0044046
Sequence
42- AGUGUUUCCUACUUUAUGGAUG -64
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