MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-142-P4-v3

Family name MIR-142 (all species)
Seed GUAGUGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-142-2
Paralogues Ami-Mir-142-P2-v1  Ami-Mir-142-P2-v2  Ami-Mir-142-P2-v3  Ami-Mir-142-P2-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v4 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017710586.1: 18397-18455 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-142-P4-v3)
Mir-142-P4-v4 NW_017710586.1: 18395-18457 [-] UCSC
Mir-142-P4-v1 NW_017710586.1: 18397-18455 [-] UCSC
Mir-142-P4-v2 NW_017710586.1: 18397-18455 [-] UCSC
Mir-142-P4-v3 NW_017710586.1: 18397-18455 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCGACGGCAACGGUGACAGUCUCCCCCCCCCAUAAAGUAGCGAGCACGACUCCGCCCCCGCGCCCGUGUAGUGUUUCCUACUUUAUGGAGGGGGUGGCUGGGAGCAACGGAGACGCGGG
Get precursor sequence
Structure
        10           20        30        40        50         
GCGACGGCAACGGUGAC---|   U     CC           C      G  UCCGCCCC 
                    AGUC CCCCC  CCAUAAAGUAG GAGCAC AC        \
                    UCGG GGGGG  GGUAUUUCAUC UUUGUG UG        C
GGGCGCAGAGGCAACGAGGG^   U     A-           C      A  UGCCCGCG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-142-P4-v3_5p*

mirBase accessionMIMAT0038164
Sequence
0- CAUAAAGUAGCGAGCACGACUCC -23
Get sequence
Mature sequence

Ami-Mir-142-P4-v3_3p

mirBase accessionMIMAT0038163
Sequence
36- UGUAGUGUUUCCUACUUUAUGGA -59
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