MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-142-P4-v1

Family name MIR-142 (all species)
Seed AUAAAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-142b
Paralogues Tni-Mir-142-P2-v1  Tni-Mir-142-P2-v2  Tni-Mir-142-P2-v3  Tni-Mir-142-P2-v4  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
16: 3999100-3999159 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v1)
Mir-142-P4-v4 16: 3999098-3999161 [+] UCSC Ensembl
Mir-142-P4-v1 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P4-v2 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P4-v3 16: 3999100-3999159 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAACCUUCUGAUGUACAGUGCUGUCACCCAUAAAGUAGAAAGCACUACUAAACGUCUUUACACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGCACUGUUGGCCGCGGAGAAACUCA
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Structure
        10          20        30        40        50         
CAGAACCUUCUGAUGUA--|     UG   C           A         UAAACGUC 
                   CAGUGC  UCA CCAUAAAGUAG AAGCACUAC        U
                   GUCACG  AGU GGUAUUUCAUC UUUGUGAUG        U
ACUCAAAGAGGCGCCGGUU^     UG   A           C         UGACACAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-142-P4-v1_5p

mirBase accessionMIMAT0002946
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Tni-Mir-142-P4-v1_3p*

mirBase accessionNone
Sequence
39- UAGUGUUUCCUACUUUAUGGA -60
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