MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-142-P4-v1

Family name MIR-142 (all species)
Seed AUAAAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-142-2
Paralogues Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig391504: 965-1024 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v1)
Mir-142-P4-v4 contig391504: 963-1026 [-] UCSC Ensembl
Mir-142-P4-v1 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v2 contig391504: 965-1024 [-] UCSC Ensembl
Mir-142-P4-v3 contig391504: 965-1024 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUGGAUCUACAAAUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUCAAUGCAAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGAUGGCUGCAGGUGAUCAAC
Get precursor sequence
Structure
        10          20        30        40        50         
CCAUGGAUCUACAAAUA--|     UG   C           A         UAAACUUC 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        A
CAACUAGUGGACGUCGGUA^     UG   A           C         UGAAACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-142-P4-v1_5p

mirBase accessionMIMAT0044045
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Gmo-Mir-142-P4-v1_3p*

mirBase accessionMIMAT0044046
Sequence
39- UAGUGUUUCCUACUUUAUGGA -60
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